PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027651.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SRS
Protein Properties Length: 328aa    MW: 33393.4 Da    PI: 7.8278
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027651.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022191e-671082683153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskke 99 
                  s t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + aaa   a +++ +++++k++r l  ++q++ s+t++s+++++++
  Pbr027651.1 108 SSTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSAAAGGGAGSNSgSTSSAKKPR-LVGASQTTPSHTSTSNTTPPRS 204
                  6799*************************************************9999999999884455555555.569999**************** PP

       DUF702 100 letss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                   +tss          lP +v+++avf+cvrv++v+dge+e+aY+++v+i+GhvfkG+LydqG++
  Pbr027651.1 205 YDTSSshqdagfkdpLPGQVRAPAVFKCVRVTAVEDGEDEYAYHAVVKINGHVFKGFLYDQGVD 268
                  ***999********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-61110268IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.3E-27112154IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.7E-28220267IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSNVDDDDED THTPAGMSMG MGMSMGMMSG GHQRNNRSSS AAGGGGIQLW QQNPPHFFKK  60
NHHEAAVTTN LGGIHLNQDG DGGGRGGGGG GGGNNIMNAG SAAASSGSST MTCQDCGNQA  120
KKDCTHRRCR TCCKSRGFDC ATHVKSTWVP AARRRERQLM SAAAGGGAGS NSGSTSSAKK  180
PRLVGASQTT PSHTSTSNTT PPRSYDTSSS HQDAGFKDPL PGQVRAPAVF KCVRVTAVED  240
GEDEYAYHAV VKINGHVFKG FLYDQGVDGR EGFPDISELH LGGGGTTSGG NGGGRNGASS  300
PILDPSDVYA ASGAGLLGGS NFGNPIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18290GGRGGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337064.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1, partial
SwissprotQ94CK91e-83LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLM5WND71e-120M5WND7_PRUPE; Uncharacterized protein
STRINGGLYMA02G44860.25e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-70Lateral root primordium (LRP) protein-related